Function reference • breedSimulatR

Main class

specie: R6 Class Representing a Specie

SNPinfo: R6 Class representing a set of SNP markers

haplotype: R6 Class representing an haplotype

individual: R6 class representing an individual

population: R6 class representing a population

Utils functions

createPop(): Create population object from genotype data.frame

readVCF(): Create `population` and `SNPinfo` objects from VCF file

Phenotyping class

trait: R6 class representing a phenotypic trait

phenotyper: R6 class representing a phenotyper

Selection functions

selectBV(): Selection according to breeding values

selectWBV(): Selection according to weighted breeding values

Crossing functions

makeSingleCross(): Cross two individuals together

makeCrosses(): Proceed several crosses

Mating functions

randomMate(): Random Mating

Data

exampleData: Example of data